vcregression
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How to use vc_regression
Notes on the upper limit of the size sequence space
Data preparation
example
Tutorial
Data Preparation
Estimation of variance components
MAP estimate
Estimate posterior variance
Posterior sampling using Hamiltonian Monte Carlo
The HMC algorithm
How to use
vc_hmc.py
Running the HMC sampling
Convergence diagnostics
Implementation
vc_prep.py
Output files
vc_map_estimate.py
Output file
vc_pos_var.py
input sequences
Output file
vc_hmc.py
Output files
vc_hmc_diagnosis.py
vcregression
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