vcregression
latest
  • How to use vc_regression
    • Notes on the upper limit of the size sequence space
  • Data preparation
    • example
  • Tutorial
    • Data Preparation
    • Estimation of variance components
    • MAP estimate
    • Estimate posterior variance
    • Posterior sampling using Hamiltonian Monte Carlo
      • The HMC algorithm
      • How to use vc_hmc.py
      • Running the HMC sampling
      • Convergence diagnostics
  • Implementation
    • vc_prep.py
      • Output files
    • vc_map_estimate.py
      • Output file
    • vc_pos_var.py
      • input sequences
      • Output file
    • vc_hmc.py
      • Output files
    • vc_hmc_diagnosis.py
vcregression
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